JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CARD8_chr19_48203086_48260912	0/0	t0036	3995	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0037	3994	1	0	0	0	0	1	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0038	3998	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0039	3997	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0040	3997	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0041	3996	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0042	3998	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0043	3997	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0044	3996	1	0	0	0	0	1	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0045	3996	1	0	0	0	0	1	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0046	3997	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0047	3995	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0048	3994	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0049	3997	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0050	3998	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0051	3995	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0052	3997	1	0	0	0	0	1	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0053	3998	1	0	0	0	0	1	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0054	3860	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0055	3994	1	0	1	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0056	3996	1	0	0	0	1	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0057	3998	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0058	3999	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0059	3995	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0060	3997	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0061	3997	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0062	3996	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0063	3995	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0064	3997	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0065	3994	1	0	1	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD9_chr9_136358956_136378669	1/1	t0001	501	306	72	41	142	13	36	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0002	501	88	20	37	17	3	11	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0003	501	3	0	0	3	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0004	501	2	0	0	2	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0005	501	1	0	0	0	0	1	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0006	501	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0007	501	1	0	0	1	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0008	501	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0009	501	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0010	475	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	t0011	501	1	0	0	1	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARF_chr2_202907275_202993263	0/0	t0001	5792	24	2	5	13	0	4	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0002	5850	22	1	2	17	0	2	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0003	5794	18	3	2	9	0	4	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0004	5800	18	0	3	12	1	2	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0005	5852	14	0	5	5	1	3	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0006	5798	14	2	2	9	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0007	5796	11	4	2	5	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/1	t0008	5856	9	1	4	1	0	2	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0009	5790	9	0	4	3	0	2	copy fasta	CARF	chr2	202907275	202993263