JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CARF_chr2_202907275_202993263	1/0	t0010	5797	7	4	1	0	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0011	5802	6	0	1	4	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0012	5800	6	4	2	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0013	5799	5	1	3	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0014	5850	5	0	0	4	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0015	5798	5	5	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0016	5793	5	0	2	1	2	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0017	5791	4	4	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0018	5793	4	4	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0019	5799	4	0	0	3	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0020	5801	4	0	1	3	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0021	5854	4	0	3	0	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0022	5794	4	4	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0023	5802	4	3	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0024	5862	3	0	0	3	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0025	5850	3	1	0	1	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0026	5848	3	0	0	2	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0027	5856	3	3	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0028	5852	3	0	0	3	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0029	5780	3	2	0	0	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0030	5798	3	0	0	3	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0031	5771	2	2	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0032	5795	2	2	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0033	5797	2	0	1	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0034	5799	2	0	0	2	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0035	5808	2	0	0	2	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0036	5854	2	2	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0037	5878	2	0	2	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0038	5854	2	0	1	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0039	5856	2	0	0	0	2	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0040	5808	2	2	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0041	5774	2	0	0	2	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0042	5792	2	2	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0043	5794	2	0	0	2	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0044	5804	2	1	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0045	5824	2	2	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0046	5796	2	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0047	5789	2	0	0	0	2	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0048	5797	2	0	1	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0049	5793	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0050	5793	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0051	5795	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0052	5799	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0053	5809	1	0	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0054	5797	1	0	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0055	5799	1	0	0	0	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0056	5803	1	0	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0057	5797	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0058	5799	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0059	5804	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263