JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CARF_chr2_202907275_202993263	0/0	t0060	5808	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0061	5850	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0062	5848	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0063	5874	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0064	5846	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0065	5850	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0066	5852	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0067	5876	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0068	5878	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0069	5848	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0070	5852	1	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0071	5876	1	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0072	5850	1	0	0	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0073	5868	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0074	5848	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0075	5852	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0076	5852	1	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0077	5852	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0078	5884	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0079	5850	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0080	5852	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0081	5854	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0082	5854	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0083	5856	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0084	5858	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0085	5882	1	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0086	5856	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0087	5858	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0088	5846	1	0	0	0	1	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0089	5854	1	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0090	5856	1	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0091	5814	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0092	5850	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0093	5788	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0094	5796	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0095	5796	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0096	5802	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0097	5804	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0098	5810	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0099	5814	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0100	5812	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0101	5816	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0102	5804	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0103	5798	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0104	5796	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0105	5800	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0106	5794	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0107	5850	1	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0108	5796	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0109	5788	1	0	0	1	0	copy fasta	CARF	chr2	202907275	202993263