JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CARF_chr2_202907275_202993263	0/0	t0110	5796	1	0	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0111	5802	1	0	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0112	5798	1	0	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0113	5796	1	0	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0114	5856	1	0	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0115	5783	1	0	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0116	5789	1	0	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0117	5791	1	0	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0118	5795	1	0	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	t0119	5788	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARHSP1_chr16_8847947_8874006	0/1	t0001	2266	173	23	28	90	9	22	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0002	2272	115	27	18	56	5	9	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0003	2268	75	1	13	50	2	9	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0004	2266	14	0	11	3	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0005	2267	11	7	1	1	1	1	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	1/0	t0006	2266	10	9	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0007	2266	9	0	8	0	0	1	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0008	2266	7	4	0	1	0	2	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0009	2267	5	1	3	0	1	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0010	2266	3	3	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0011	2267	3	3	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0012	2268	3	3	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0013	2268	3	3	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0014	2266	2	2	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0015	2266	2	1	1	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0016	2266	2	2	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0017	2272	2	2	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0018	2272	2	0	0	0	0	2	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0019	2266	2	0	2	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0020	2266	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0021	2272	1	1	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0022	2267	1	1	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0023	2266	1	0	1	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0024	2266	1	1	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0025	2266	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0026	2266	1	0	0	0	0	1	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0027	2272	1	1	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0028	2272	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0029	2266	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0030	2267	1	1	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0031	2272	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0032	2272	1	0	0	0	0	1	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0033	2272	1	0	0	0	0	1	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0034	2272	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0035	2266	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0036	2268	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0037	2267	1	1	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0038	2268	1	1	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0039	2268	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	t0040	2268	1	0	1	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006