JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CARM1_chr19_10866553_10928075	0/0	t0045	1457	1	0	0	1	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0046	1457	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0047	1460	1	0	1	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0048	1451	1	0	0	0	1	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0049	1466	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0050	1469	1	0	0	1	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0051	1469	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0052	1475	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0053	1481	1	0	0	0	0	1	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0054	1487	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0055	1481	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0056	1472	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0057	1475	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0058	1493	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0059	1490	1	0	0	0	0	1	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0060	1493	1	0	0	1	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0061	1502	1	0	0	1	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0062	1493	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0063	1511	1	0	1	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0064	1490	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0065	1454	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0066	1457	1	0	0	0	0	1	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	t0067	1469	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARMIL1_chr6_25274374_25625530	0/0	t0001	1368	35	13	6	12	0	4	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0002	1364	29	2	5	16	1	5	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0003	1369	24	5	6	10	1	2	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/1	t0004	1360	14	2	3	1	1	6	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0005	1369	14	7	2	3	1	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0006	1367	13	4	2	2	0	5	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	1/0	t0007	1370	9	2	0	5	0	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0008	1365	7	5	0	0	1	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0009	1365	6	2	3	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0010	1368	6	3	1	2	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0011	1366	4	2	0	1	1	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0012	1366	4	4	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0013	1370	3	1	2	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0014	1361	3	0	2	0	0	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0015	1367	3	3	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0016	1371	3	2	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0017	1365	2	2	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0018	1365	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0019	1368	1	0	1	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0020	1370	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0021	1368	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0022	1369	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0023	1370	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	t0024	1371	1	0	1	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL2_chr16_67640144_67662569	1/1	t0001	155	277	82	54	91	14	34	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	t0002	155	5	0	0	5	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL3_chr14_24047009_24074729	1/1	t0001	471	381	72	69	179	16	43	copy fasta	CARMIL3	chr14	24047009	24074729