JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CARMIL3_chr14_24047009_24074729	0/0	t0002	471	25	16	1	5	0	3	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	t0003	470	4	2	0	0	0	2	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	t0004	471	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	t0005	471	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	t0006	459	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	t0007	471	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARNMT1_chr9_74975790_75033293	1/0	t0001	3030	149	40	20	67	7	14	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/1	t0002	3031	82	7	24	34	7	9	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0003	3031	78	14	9	47	2	6	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0004	3030	8	0	3	3	0	2	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0005	3030	8	8	0	0	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0006	3030	8	2	1	3	1	1	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0007	3030	8	0	5	0	1	2	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0008	3029	5	0	2	2	0	1	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0009	3030	3	0	0	0	0	3	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0010	3030	3	2	1	0	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0011	3031	3	3	0	0	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0012	3030	2	0	0	2	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0013	3030	2	0	0	1	0	1	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0014	3030	1	1	0	0	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0015	3029	1	1	0	0	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0016	3030	1	0	0	1	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0017	3031	1	1	0	0	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0018	3029	1	0	0	0	0	1	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0019	3031	1	1	0	0	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	t0020	3030	1	0	1	0	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNS1_chr11_67410678_67430604	1/1	t0001	1114	123	8	28	54	6	25	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0002	1116	39	38	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0003	1126	26	7	15	4	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0004	1118	20	2	3	14	1	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0005	1114	20	1	4	10	3	2	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0006	1126	15	1	3	10	0	1	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0007	1116	9	0	1	3	1	4	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0008	1118	8	0	5	0	2	1	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0009	1126	8	0	0	8	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0010	1132	7	0	0	7	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0011	1120	6	5	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0012	1128	6	4	1	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0013	1128	6	3	1	2	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0014	1118	5	0	1	3	1	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0015	1116	5	1	3	0	0	1	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0016	1130	4	1	0	3	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0017	1102	3	0	0	3	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0018	1130	3	0	0	3	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0019	1130	2	2	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0020	1128	2	1	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0021	1120	2	2	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0022	1116	2	1	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0023	1116	2	0	2	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0024	1122	2	1	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604