JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CARNS1_chr11_67410678_67430604	0/0	t0025	1118	2	1	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0026	1128	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0027	1128	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0028	1124	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0029	1122	1	0	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0030	1116	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0031	1136	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0032	1114	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0033	1114	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0034	1136	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0035	1134	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0036	1132	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0037	1130	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0038	1128	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0039	1143	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0040	1124	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0041	1120	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0042	1167	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0043	1122	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	t0044	1120	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARS1_chr11_2995929_3062423	0/1	t0001	242	321	96	58	108	18	40	copy fasta	CARS1	chr11	2995929	3062423
CARS2_chr13_110636417_110711116	1/1	t0001	144	261	38	58	119	12	32	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	t0002	144	104	45	16	35	2	6	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	t0003	144	6	6	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	t0004	194	1	1	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARTPT_chr5_71714275_71726045	1/1	t0001	450	361	68	60	182	15	34	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	t0002	449	44	1	4	32	0	7	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	t0003	450	35	11	10	5	1	8	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	t0004	449	16	0	9	7	0	0	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	t0005	450	12	12	0	0	0	0	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	t0006	450	2	2	0	0	0	0	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	t0007	450	2	2	0	0	0	0	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	t0008	450	1	0	0	0	0	1	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	t0009	450	1	0	1	0	0	0	copy fasta	CARTPT	chr5	71714275	71726045
CASC3_chr17_40135537_40177171	1/1	t0001	1779	252	75	52	85	11	27	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	t0002	1779	4	4	0	0	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	t0003	1779	2	2	0	0	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	t0004	1779	2	0	1	0	1	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	t0005	1779	1	1	0	0	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	t0006	1779	1	1	0	0	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	t0007	1779	1	0	0	0	0	1	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	t0008	1779	1	0	0	1	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	t0009	1779	1	1	0	0	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	t0010	1779	1	0	1	0	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASD1_chr7_94504809_94562019	0/0	t0001	1538	187	24	23	110	4	26	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	1/1	t0002	1538	112	31	29	38	3	9	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	t0003	1538	61	0	9	45	3	4	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	t0004	1538	19	19	0	0	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	t0005	1538	6	0	6	0	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	t0006	1538	4	4	0	0	0	0	copy fasta	CASD1	chr7	94504809	94562019