JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASD1_chr7_94504809_94562019	0/0	t0007	1538	2	0	0	2	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	t0008	1538	2	0	0	2	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	t0009	1538	2	0	0	2	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	t0010	1538	1	0	1	0	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	t0011	1538	1	0	0	0	0	1	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	t0012	1538	1	0	0	1	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASKIN1_chr16_2172180_2201605	1/1	t0001	1544	295	63	59	120	13	38	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0002	1532	12	9	0	3	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0003	1544	10	0	4	0	2	4	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0004	1544	5	2	0	3	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0005	1544	3	3	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0006	1544	2	2	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0007	1544	2	0	0	0	0	2	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0008	1544	2	0	0	2	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0009	1544	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0010	1532	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0011	1532	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0012	1532	1	0	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0013	1532	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0014	1544	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0015	1544	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0016	1544	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0017	1544	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0018	1544	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0019	1544	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0020	1544	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0021	1544	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0022	1544	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0023	1544	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0024	1544	1	0	0	0	1	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0025	1544	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0026	1544	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	t0027	1544	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN2_chr17_75495261_75520537	0/1	t0001	1361	197	24	40	89	10	33	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	1/0	t0002	1361	153	39	30	69	5	9	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0003	1361	39	24	10	0	3	2	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0004	1361	10	0	2	7	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0005	1361	6	5	1	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0006	1361	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0007	1361	1	0	1	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0008	1361	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0009	1361	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0010	1361	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0011	1361	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0012	1361	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0013	1361	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	t0014	1361	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASK_chrX_41509934_41928554	1/1	t0001	6053	94	12	16	47	4	13	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0002	6044	17	0	4	7	2	4	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0003	6056	12	6	0	5	0	1	copy fasta	CASK	chrX	41509934	41928554