JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASK_chrX_41509934_41928554	0/0	t0004	6050	8	1	0	6	0	1	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0005	6053	4	0	3	0	1	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0006	6047	4	3	1	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0007	6033	3	1	2	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0008	6053	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0009	6052	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0010	6055	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0011	6032	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0012	6052	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0013	6050	1	0	1	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0014	6032	1	0	1	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0015	6038	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0016	6047	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0017	6053	1	0	0	0	1	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0018	6056	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0019	6052	1	0	0	0	0	1	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0020	6057	1	0	1	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0021	6056	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0022	6059	1	0	0	0	1	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0023	6062	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0024	6029	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0025	6035	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0026	6045	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0027	6047	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0028	6054	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	t0029	6053	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASP10_chr2_201178141_201226665	1/0	t0001	4100	153	20	37	64	2	29	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/1	t0002	4099	85	18	24	24	9	9	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0003	4101	17	17	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0004	4101	11	0	2	9	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0005	4102	7	7	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0006	4100	6	0	3	2	0	1	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0007	4098	5	3	1	0	1	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0008	4099	5	5	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0009	4100	4	4	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0010	4100	4	0	0	4	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0011	4100	3	3	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0012	4099	2	2	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0013	4100	2	2	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0014	4100	2	0	0	2	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0015	4099	2	1	0	0	0	1	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0016	4067	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0017	4099	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0018	4099	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0019	4098	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0020	4100	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0021	4100	1	0	0	1	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0022	4100	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0023	4100	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0024	4099	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665