JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASP10_chr2_201178141_201226665	0/0	t0025	4099	1	0	0	1	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0026	4100	1	0	0	1	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0027	4099	1	0	1	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0028	4100	1	0	0	1	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	t0029	4100	1	0	0	1	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP14_chr19_15044480_15063293	0/1	t0001	2417	119	7	23	71	7	10	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0002	2417	99	25	19	34	5	16	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	1/0	t0003	2417	77	1	14	52	1	8	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0004	2417	36	25	2	7	0	2	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0005	2418	25	14	5	1	0	5	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0006	2416	15	0	7	0	5	3	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0007	2417	13	0	4	9	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0008	2413	10	0	0	10	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0009	2418	6	5	1	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0010	2417	6	5	1	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0011	2417	5	0	0	5	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0012	2417	3	3	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0013	2417	2	2	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0014	2417	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0015	2418	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0016	2417	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0017	2418	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0018	2418	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0019	2416	1	0	0	0	0	1	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0020	2417	1	0	0	0	0	1	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0021	2418	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0022	2418	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0023	2418	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0024	2417	1	0	0	1	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	t0025	2417	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP1_chr11_105020508_105040144	0/0	t0001	782	224	34	37	119	6	28	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/1	t0002	782	98	16	18	52	5	6	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0003	782	19	3	12	0	0	4	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0004	782	15	12	3	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	1/0	t0005	782	12	11	0	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0006	782	11	8	3	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0007	783	6	3	2	0	0	1	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0008	782	5	5	0	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0009	782	1	0	1	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0010	782	1	1	0	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0011	782	1	1	0	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0012	782	1	0	0	1	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0013	782	1	0	0	1	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0014	783	1	0	0	1	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0015	858	1	0	0	0	1	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	t0016	782	1	0	0	0	0	1	copy fasta	CASP1	chr11	105020508	105040144
CASP2_chr7_143283351_143312696	1/1	t0001	2731	152	53	29	48	8	12	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0002	2732	17	5	4	6	0	2	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0003	2730	11	5	1	4	0	1	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0004	2731	8	1	2	1	3	1	copy fasta	CASP2	chr7	143283351	143312696