JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASP2_chr7_143283351_143312696	0/0	t0005	2730	6	0	2	2	0	2	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0006	2731	5	0	0	3	0	2	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0007	2731	4	3	0	1	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0008	2731	3	0	2	0	1	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0009	2732	3	0	2	0	0	1	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0010	2731	2	1	1	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0011	2731	2	2	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0012	2731	2	2	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0013	2731	2	0	2	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0014	2732	2	2	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0015	2731	2	0	2	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0016	2731	2	2	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0017	2731	2	2	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0018	2730	1	0	1	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0019	2731	1	0	1	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0020	2731	1	0	0	1	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0021	2731	1	0	0	0	0	1	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0022	2731	1	0	0	0	1	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0023	2732	1	0	0	0	0	1	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0024	2731	1	0	1	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0025	2730	1	0	1	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0026	2731	1	0	0	0	0	1	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0027	2731	1	0	1	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0028	2731	1	1	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0029	2731	1	0	0	0	1	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0030	2731	1	0	0	1	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0031	2730	1	0	0	1	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0032	2732	1	1	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0033	2731	1	0	1	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0034	2730	1	1	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0035	2731	1	1	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0036	2731	1	0	1	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0037	2732	1	1	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	t0038	2732	1	1	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP3_chr4_184622696_184654447	1/0	t0001	1812	107	28	25	34	9	10	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0002	1812	101	10	20	62	1	8	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/1	t0003	1812	53	3	9	29	4	7	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0004	1812	31	25	1	2	0	3	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0005	1815	19	0	11	0	1	7	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0006	1812	19	12	0	4	0	3	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0007	1812	7	7	0	0	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0008	1815	5	0	2	0	1	2	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0009	1812	4	1	1	1	1	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0010	1812	4	4	0	0	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0011	1812	2	1	1	0	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0012	1812	2	2	0	0	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0013	1812	2	1	0	1	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0014	1815	1	0	1	0	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0015	1812	1	0	0	1	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0016	1812	1	1	0	0	0	0	copy fasta	CASP3	chr4	184622696	184654447