JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASP3_chr4_184622696_184654447	0/0	t0017	1812	1	1	0	0	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0018	1812	1	0	0	0	0	1	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0019	1812	1	0	0	0	1	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0020	1812	1	0	1	0	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0021	1812	1	0	0	1	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0022	1812	1	0	0	1	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	t0023	1812	1	0	0	0	0	1	copy fasta	CASP3	chr4	184622696	184654447
CASP4_chr11_104937866_104973574	1/1	t0001	163	323	72	65	137	11	36	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	t0002	163	19	8	3	1	1	6	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	t0003	163	9	6	3	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	t0004	163	3	3	0	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	t0005	163	3	2	1	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	t0006	163	1	1	0	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP5_chr11_104989243_105028168	1/1	t0001	142	392	96	80	158	10	46	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	t0002	142	2	0	2	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	t0003	142	2	0	2	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP6_chr4_109683628_109708445	0/1	t0001	753	129	29	24	55	6	14	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	1/0	t0002	753	127	12	29	73	2	10	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0003	758	119	36	19	44	8	12	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0004	753	10	0	0	7	0	3	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0005	752	7	4	1	2	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0006	754	6	6	0	0	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0007	752	5	0	0	5	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0008	752	3	0	2	0	0	1	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0009	758	3	0	1	0	0	2	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0010	757	2	1	0	1	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0011	754	2	2	0	0	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0012	753	1	0	0	1	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0013	752	1	0	0	1	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	t0014	753	1	0	0	1	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP7_chr10_113674912_113735905	0/0	t0001	1433	113	15	23	62	3	10	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0002	1433	76	17	14	33	4	8	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0003	1433	72	27	6	25	2	12	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/1	t0004	1433	61	17	21	14	3	5	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	1/0	t0005	1433	57	11	11	25	2	7	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0006	1433	6	0	0	6	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0007	1433	6	0	0	6	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0008	1433	2	2	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0009	1433	2	2	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0010	1433	2	1	1	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0011	1433	1	0	0	1	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0012	1433	1	0	1	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0013	1433	1	0	0	1	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0014	1433	1	0	1	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0015	1433	1	0	0	1	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0016	1433	1	0	0	1	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0017	1433	1	1	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0018	1433	1	0	0	1	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	t0019	1433	1	1	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP8_chr2_201255536_201292709	0/1	t0001	1220	106	3	22	66	2	12	copy fasta	CASP8	chr2	201255536	201292709