JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASP8_chr2_201255536_201292709	0/0	t0002	1222	90	17	1	55	0	17	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	1/0	t0003	1220	88	14	16	52	0	5	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0004	1220	29	24	0	0	0	5	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0005	1220	26	20	5	0	1	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0006	1220	14	1	10	0	1	2	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0007	1220	12	7	3	1	1	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0008	1220	8	0	4	0	0	4	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0009	1222	6	4	2	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0010	1220	1	0	0	0	0	1	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0011	1220	1	0	0	0	1	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0012	1220	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0013	1220	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0014	1220	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0015	1220	1	0	1	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	t0016	1222	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP9_chr1_15486401_15529215	1/1	t0001	1558	260	47	52	117	14	28	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0002	1558	70	29	16	14	2	9	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0003	1558	6	5	1	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0004	1560	3	0	0	3	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0005	1563	2	2	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0006	1558	2	1	1	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0007	1558	2	2	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0008	1558	1	0	0	0	0	1	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0009	1563	1	1	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0010	1558	1	0	0	1	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0011	1558	1	1	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	t0012	1558	1	0	0	1	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASQ1_chr1_160185575_160206886	1/1	t0001	688	417	79	81	195	14	46	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	t0002	688	10	8	2	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	t0003	688	5	5	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	t0004	688	2	1	1	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	t0005	688	2	2	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	t0006	688	1	1	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	t0007	688	1	0	0	1	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	t0008	688	1	1	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	t0009	688	1	1	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ2_chr1_115695021_115773714	0/0	t0001	1394	92	27	19	40	1	5	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/1	t0002	1391	92	11	14	45	6	15	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0003	1394	80	9	14	45	3	9	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0004	1394	35	5	4	25	0	1	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0005	1393	17	2	10	1	0	4	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0006	1394	8	0	0	8	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0007	1394	6	6	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0008	1391	5	5	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0009	1394	5	5	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0010	1394	4	3	1	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0011	1394	4	4	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	1/0	t0012	1394	3	2	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0013	1394	2	2	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0014	1393	2	2	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714