JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASQ2_chr1_115695021_115773714	0/0	t0015	1391	2	2	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0016	1393	1	1	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0017	1393	1	1	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0018	1391	1	1	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0019	1394	1	1	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0020	1393	1	1	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0021	1391	1	0	0	0	0	1	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	t0022	1393	1	0	0	0	0	1	copy fasta	CASQ2	chr1	115695021	115773714
CASR_chr3_122178668_122296629	0/0	t0001	6825	63	19	2	40	0	2	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0002	6823	53	1	3	40	1	8	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0003	6825	47	12	23	0	5	7	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0004	6826	16	0	6	3	2	5	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0005	6824	16	16	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0006	6824	15	3	6	3	1	2	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0007	6824	12	11	1	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0008	6826	11	6	1	2	0	2	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/1	t0009	6825	10	0	3	0	4	2	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0010	6826	9	2	3	0	1	3	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	1/0	t0011	6826	8	7	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0012	6823	7	0	0	7	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0013	6824	7	0	5	0	1	1	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0014	6826	4	4	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0015	6826	2	2	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0016	6823	2	0	0	2	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0017	6823	2	0	0	2	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0018	6824	2	2	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0019	6825	2	1	1	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0020	6825	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0021	6825	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0022	6826	1	1	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0023	6826	1	0	0	0	0	1	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0024	6826	1	0	1	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0025	6823	1	0	0	0	0	1	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0026	6824	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0027	6823	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0028	6823	1	0	0	0	1	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0029	6823	1	0	0	0	0	1	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0030	6826	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0031	7816	1	1	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0032	6825	1	0	1	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0033	6825	1	1	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0034	6825	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0035	6825	1	1	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0036	6825	1	1	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0037	6826	1	1	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0038	6825	1	0	0	0	0	1	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0039	6825	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0040	6825	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0041	6825	1	1	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0042	6825	1	1	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629