JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASR_chr3_122178668_122296629	0/0	t0043	6825	1	0	1	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0044	6825	1	0	1	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	t0045	6826	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASS4_chr20_56407260_56465382	0/0	t0001	1835	222	44	34	132	3	9	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	1/1	t0002	1835	114	35	36	18	10	13	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0003	1835	20	5	4	1	0	10	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0004	1835	5	5	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0005	1835	4	3	1	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0006	1835	2	0	0	2	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0007	1835	2	2	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0008	1835	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0009	1835	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0010	1835	1	0	1	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0011	1835	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0012	1835	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0013	1835	1	0	0	0	1	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	t0014	1835	1	0	0	1	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASTOR1_chr22_30280117_30294505	0/1	t0001	512	354	80	64	161	14	34	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	1/0	t0002	512	56	5	16	22	4	8	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	t0003	512	6	6	0	0	0	0	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	t0004	512	4	0	0	4	0	0	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	t0005	512	2	0	0	0	0	2	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	t0006	512	1	0	0	1	0	0	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	t0007	512	1	1	0	0	0	0	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR2_chr7_74959705_75036528	0/0	t0001	7111	61	20	12	20	2	7	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0002	7112	11	2	2	4	0	3	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0003	7117	6	4	2	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/1	t0004	7111	5	0	1	1	0	2	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0005	7117	5	0	0	5	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0006	7111	5	0	0	5	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0007	7110	4	0	4	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0008	7111	4	4	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0009	7111	4	3	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0010	7112	4	2	1	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0011	7129	4	0	1	0	1	2	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0012	7130	4	0	3	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0013	7132	4	4	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0014	7110	4	4	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0015	7111	3	0	0	0	1	2	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0016	7110	3	3	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0017	7111	3	1	0	1	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0018	7110	3	0	1	1	1	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0019	7111	3	3	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0020	7116	2	0	2	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0021	7111	2	0	2	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0022	7129	2	0	2	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0023	7124	2	2	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0024	7111	2	0	0	2	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0025	7111	2	2	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0026	7112	2	0	2	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528