JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASTOR2_chr7_74959705_75036528	0/0	t0027	7113	2	0	2	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0028	7112	2	2	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0029	7130	2	2	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0030	7111	2	0	2	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0031	7118	2	1	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0032	7123	2	1	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0033	7124	2	1	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0034	7128	2	1	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0035	7130	2	0	2	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0036	7110	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0037	7104	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0038	7118	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0039	7126	1	0	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0040	7127	1	0	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0041	7128	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0042	7130	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0043	7112	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	1/0	t0044	7111	1	0	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0045	7131	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0046	7112	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0047	7125	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0048	7140	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0049	7111	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0050	7129	1	0	0	0	1	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0051	7111	1	0	0	0	1	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0052	7112	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0053	7113	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0054	7112	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0055	7112	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0056	7111	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0057	7111	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0058	7111	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0059	7111	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0060	7110	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0061	7111	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0062	7113	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0063	7113	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0064	7111	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0065	7111	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0066	7111	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0067	7111	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0068	7111	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0069	7112	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0070	7113	1	0	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0071	7116	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0072	7116	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0073	7117	1	0	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0074	7117	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0075	7128	1	0	0	0	1	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0076	7130	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528