JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASTOR2_chr7_74959705_75036528	0/0	t0077	7133	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0078	7112	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0079	7131	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0080	7125	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0081	7111	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0082	7124	1	0	0	1	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0083	7124	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0084	7111	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0085	7122	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0086	7103	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0087	7124	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0088	7127	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0089	7111	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0090	7114	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	t0091	7111	1	0	0	0	0	1	copy fasta	CASTOR2	chr7	74959705	75036528
CAST_chr5_96657376_96779683	0/1	t0001	2115	143	27	19	77	5	14	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	1/0	t0002	2115	89	23	9	45	1	10	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0003	2115	52	6	20	16	2	8	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0004	2115	14	0	6	0	4	4	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0005	2116	7	7	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0006	2117	6	0	2	0	4	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0007	2116	5	5	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0008	2116	5	0	2	3	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0009	2119	5	5	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0010	2115	5	1	2	0	0	2	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0011	2115	4	3	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0012	2116	3	0	0	0	0	3	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0013	2116	3	3	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0014	2123	3	2	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0015	2117	3	0	0	3	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0016	2115	2	0	2	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0017	2115	2	0	0	2	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0018	2115	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0019	2115	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0020	2115	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0021	2115	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0022	2115	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0023	2115	1	0	0	0	0	1	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	t0024	2115	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CASZ1_chr1_10631604_10801646	1/0	t0001	2655	68	18	8	32	1	8	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0002	2655	24	12	2	10	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0003	2655	14	1	8	0	2	3	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0004	2654	13	4	3	5	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0005	2654	9	0	2	0	0	7	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0006	2656	9	4	2	3	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0007	2654	8	5	0	2	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/1	t0008	2653	6	0	2	0	1	2	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0009	2661	5	3	0	0	1	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0010	2653	5	1	2	1	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0011	2653	4	1	1	2	0	0	copy fasta	CASZ1	chr1	10631604	10801646