JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CASZ1_chr1_10631604_10801646	0/0	t0012	2655	4	1	2	0	1	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0013	2655	3	3	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0014	2661	3	3	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0015	2663	3	3	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0016	2662	3	2	1	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0017	2654	3	2	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0018	2652	2	0	1	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0019	2653	2	0	2	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0020	2655	2	0	1	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0021	2661	2	0	0	2	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0022	2653	2	2	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0023	2653	2	1	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0024	2655	2	2	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0025	2657	2	2	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0026	2655	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0027	2655	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0028	2654	1	0	1	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0029	2654	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0030	2654	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0031	2654	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0032	2655	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0033	2659	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0034	2660	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0035	2662	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0036	2662	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0037	2660	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0038	2660	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0039	2662	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0040	2661	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0041	2654	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0042	2655	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0043	2653	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0044	2655	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0045	2656	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0046	2653	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0047	2655	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0048	2656	1	0	1	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0049	2655	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0050	2657	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0051	2653	1	0	1	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0052	2655	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0053	2654	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0054	2655	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0055	2654	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0056	2645	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0057	2645	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0058	2655	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0059	2656	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0060	2655	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	t0061	2655	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646