Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AARS2_chr6_44293731_44318347	0/1	t0001	1861	163	34	33	68	13	14	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0002	1861	90	7	12	62	0	9	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0003	1861	48	0	2	46	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0004	1855	29	25	1	1	0	2	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0005	1861	19	1	11	2	3	2	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0006	1861	15	8	3	0	0	4	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0007	1849	5	5	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	1/0	t0008	1841	5	4	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0009	1862	4	4	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0010	1862	2	0	2	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0011	1856	2	0	0	0	0	2	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0012	1860	2	2	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0013	1855	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0014	1861	1	0	0	0	0	1	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0015	1861	1	0	1	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0016	1862	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0017	1861	1	0	0	0	0	1	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0018	1861	1	0	0	0	0	1	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0019	1889	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0020	1863	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0021	1859	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0022	1861	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0023	1861	1	0	1	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	t0024	1841	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARSD1_chr17_42945526_42969454	1/1	t0001	82	324	88	58	122	12	42	copy fasta	AARSD1	chr17	42945526	42969454
AASDHPPT_chr11_106072662_106103695	1/1	t0001	1838	213	36	42	96	9	28	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0002	1838	63	39	6	17	0	1	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0003	1838	59	0	0	57	0	2	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0004	1834	27	2	9	9	2	5	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0005	1837	5	1	0	4	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0006	1833	4	4	0	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0007	1838	4	4	0	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0008	1838	4	0	3	0	1	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0009	1838	2	2	0	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0010	1838	2	0	0	2	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0011	1838	2	0	0	2	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0012	1838	2	0	0	2	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0013	1833	2	0	2	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0014	1838	2	0	0	2	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0015	1838	2	2	0	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0016	1838	1	0	1	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0017	1838	1	0	0	0	0	1	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0018	1837	1	0	0	1	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0019	1838	1	0	1	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0020	1838	1	0	1	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0021	1838	1	0	0	1	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0022	1838	1	0	0	0	0	1	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0023	1838	1	1	0	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0024	1837	1	0	0	1	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	t0025	1838	1	0	1	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695