Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAM12_chr10_126007391_126393477	0/0	t0022	5218	2	2	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0023	5221	2	2	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0024	5222	2	0	1	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0025	5220	2	0	0	1	0	1	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0026	5226	2	0	0	2	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0027	5221	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0028	5218	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0029	5217	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0030	5224	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0031	5221	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0032	5222	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0033	5223	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0034	5224	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0035	5223	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0036	5224	1	0	0	0	0	1	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0037	5219	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0038	5218	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0039	5217	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0040	5220	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0041	5221	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0042	5219	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0043	5222	1	0	0	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0044	5222	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0045	5223	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0046	5222	1	0	0	0	0	1	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0047	5222	1	0	0	0	0	1	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0048	5220	1	0	1	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0049	5220	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	t0050	5219	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM15_chr1_155046316_155067775	1/1	t0001	345	319	92	63	98	16	48	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	t0002	345	4	4	0	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	t0003	345	1	0	1	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM17_chr2_9483486_9560830	0/1	t0001	1915	29	7	8	3	6	4	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	1/0	t0002	1917	25	0	4	9	1	10	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0003	1917	11	4	3	1	1	2	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0004	1916	10	0	1	5	0	4	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0005	1917	9	1	8	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0006	1918	9	0	4	1	1	3	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0007	1917	8	0	5	0	1	2	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0008	1916	7	7	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0009	1916	7	1	1	0	0	5	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0010	1919	6	0	1	4	0	1	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0011	1915	5	5	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0012	1915	5	4	1	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0013	1915	5	3	1	0	0	1	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0014	1915	5	1	4	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0015	1916	4	0	0	4	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0016	1917	4	4	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0017	1916	3	3	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0018	1932	3	3	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830