JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CATIP_chr2_218351857_218373094	1/1	t0001	159	356	96	69	138	14	37	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	t0002	159	6	0	0	6	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	t0003	159	4	0	3	0	0	1	copy fasta	CATIP	chr2	218351857	218373094
CATSPER1_chr11_66011752_66031479	1/1	t0001	239	253	47	46	113	12	33	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	t0002	238	81	2	22	48	4	5	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	t0003	239	68	41	4	23	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	t0004	239	4	4	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	t0005	238	1	0	1	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	t0006	239	1	0	1	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER2_chr15_43623503_43653844	1/1	t0001	2417	193	8	43	105	11	24	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0002	2417	107	34	13	49	1	10	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0003	2417	21	9	4	0	4	4	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0004	2417	18	0	1	17	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0005	2417	14	5	1	8	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0006	2417	7	7	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0007	2417	4	3	1	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0008	2417	4	4	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0009	2417	4	4	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0010	2417	4	4	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0011	2417	2	2	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0012	2417	2	2	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0013	2417	1	0	0	1	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0014	2417	1	0	1	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0015	2417	1	1	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0016	2417	1	0	0	1	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0017	2417	1	0	0	1	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0018	2417	1	1	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0019	2417	1	0	0	1	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0020	2417	1	0	0	0	0	1	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0021	2417	1	1	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0022	2417	1	1	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0023	2417	1	0	0	0	0	1	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	t0024	2417	1	0	0	1	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER3_chr5_134962907_135016696	1/1	t0001	159	380	90	78	160	12	38	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER4_chr1_26185602_26207964	1/0	t0001	449	211	56	33	92	0	29	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/1	t0002	449	178	30	41	82	13	11	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	t0003	449	3	0	2	0	0	1	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	t0004	449	2	0	1	0	1	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	t0005	449	2	2	0	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	t0006	449	1	0	1	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	t0007	449	1	0	0	0	0	1	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPERB_chr14_91575698_91737086	0/0	t0001	349	191	43	23	98	6	21	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/1	t0002	349	69	27	17	9	6	9	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	t0003	349	5	0	0	5	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	t0004	349	4	4	0	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	t0005	349	2	2	0	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERD_chr19_5715637_5783734	1/1	t0001	160	307	75	64	108	14	44	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	t0002	160	16	16	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	t0003	160	10	0	6	4	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	t0004	160	2	1	1	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734