JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CATSPERD_chr19_5715637_5783734	0/0	t0005	160	1	0	1	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERE_chr1_244456273_244645504	0/1	t0001	584	92	37	13	29	2	10	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	t0002	581	57	34	6	15	1	1	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	t0003	584	37	2	5	18	4	8	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	1/0	t0004	581	20	7	2	8	1	1	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERG_chr19_38330830_38375943	1/1	t0001	212	376	78	64	180	10	42	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERZ_chr11_64295358_64309770	1/1	t0001	178	390	94	76	162	14	42	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	t0002	178	1	0	0	1	0	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	t0003	178	1	0	0	1	0	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CAT_chr11_34433934_34477060	1/0	t0001	708	216	32	36	127	10	10	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/1	t0002	708	202	52	39	79	6	25	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	t0003	708	2	2	0	0	0	0	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	t0004	708	1	0	0	0	0	1	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	t0005	708	1	1	0	0	0	0	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	t0006	708	1	1	0	0	0	0	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	t0007	708	1	0	1	0	0	0	copy fasta	CAT	chr11	34433934	34477060
CAV1_chr7_116520036_116566179	1/0	t0001	1920	135	47	33	36	5	13	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0002	1920	90	3	17	47	7	16	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0003	1921	52	0	4	44	2	2	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/1	t0004	1920	28	18	2	1	1	5	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0005	1920	14	2	7	0	1	4	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0006	1920	5	5	0	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0007	1920	3	0	3	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0008	1920	2	1	1	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0009	1920	2	2	0	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0010	1920	2	2	0	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0011	1920	2	0	2	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0012	1920	1	1	0	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0013	1920	1	0	0	1	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0014	1920	1	0	1	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0015	1920	1	0	0	1	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0016	1920	1	0	0	1	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0017	1921	1	0	0	1	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	t0018	1920	1	1	0	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV2_chr7_116494738_116513541	0/0	t0001	2456	152	17	27	81	8	19	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	1/0	t0002	2465	58	20	15	17	0	5	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0003	2465	55	6	3	42	2	2	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/1	t0004	2466	52	21	15	1	3	11	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0005	2466	17	8	6	1	1	1	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0006	2456	8	8	0	0	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0007	2466	5	3	2	0	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0008	2465	4	4	0	0	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0009	2465	3	0	0	2	0	1	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0010	2456	3	0	0	3	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0011	2456	3	0	3	0	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0012	2456	2	2	0	0	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0013	2456	1	1	0	0	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0014	2465	1	0	0	1	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0015	2465	1	0	0	1	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0016	2465	1	0	0	1	0	0	copy fasta	CAV2	chr7	116494738	116513541