JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAV2_chr7_116494738_116513541	0/0	t0017	2465	1	0	1	0	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0018	2456	1	0	0	0	0	1	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0019	2456	1	0	0	1	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0020	2466	1	0	0	0	0	1	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0021	2456	1	0	0	0	0	1	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0022	2466	1	1	0	0	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0023	2456	1	0	0	1	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	t0024	2465	1	1	0	0	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV3_chr3_8728802_8751758	1/1	t0001	967	295	47	49	154	10	33	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0002	967	119	19	26	60	3	11	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0003	967	32	21	5	1	2	3	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0004	967	6	6	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0005	966	5	1	1	1	2	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0006	967	4	0	0	4	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0007	967	3	0	0	3	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0008	967	2	0	0	2	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0009	967	1	1	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0010	967	1	1	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0011	967	1	0	0	1	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0012	967	1	1	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0013	967	1	0	0	0	1	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0014	966	1	0	1	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0015	967	1	1	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0016	967	1	1	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0017	967	1	1	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	t0018	967	1	0	0	0	0	1	copy fasta	CAV3	chr3	8728802	8751758
CAVIN1_chr17_42397449_42428256	0/1	t0001	2398	123	25	23	50	7	17	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0002	2398	50	1	8	35	3	3	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	1/0	t0003	2398	36	31	3	0	1	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0004	2398	30	0	3	24	0	3	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0005	2407	19	0	2	17	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0006	2398	15	11	0	0	0	4	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0007	2398	9	0	1	3	1	4	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0008	2398	7	4	3	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0009	2398	7	0	0	7	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0010	2398	5	4	1	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0011	2398	5	1	2	0	0	2	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0012	2398	4	4	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0013	2398	3	0	3	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0014	2398	3	3	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0015	2398	3	3	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0016	2398	3	0	0	3	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0017	2399	2	0	0	1	0	1	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0018	2398	2	0	0	2	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0019	2399	1	1	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0020	2399	1	1	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0021	2399	1	0	0	1	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0022	2399	1	0	0	1	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0023	2398	1	0	0	0	0	1	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	t0024	2398	1	1	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256