JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAVIN4_chr9_100573079_100593389	0/0	t0020	2004	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	t0021	2004	1	0	0	1	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	t0022	2004	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CBARP_chr19_1223287_1243005	0/1	t0001	1164	236	41	37	128	7	22	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	1/0	t0002	1164	76	22	28	1	8	16	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0003	1163	54	20	3	26	2	3	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0004	1165	9	0	1	8	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0005	1164	6	0	4	0	1	1	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0006	1165	5	0	1	4	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0007	1163	3	2	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0008	1164	2	2	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0009	1164	2	2	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0010	1164	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0011	1164	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0012	1165	1	0	0	0	0	1	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0013	1164	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0014	1164	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0015	1164	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0016	1164	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0017	1164	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0018	1166	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0019	1164	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0020	1165	1	0	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0021	1164	1	0	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0022	1164	1	0	0	0	0	1	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0023	1164	1	0	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	t0024	1164	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBFA2T2_chr20_33485096_33655030	0/0	t0001	5558	61	3	9	40	2	7	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	1/0	t0002	5557	59	6	15	25	4	8	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0003	5556	43	7	6	20	5	5	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0004	5556	29	10	10	7	0	2	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0005	5556	15	15	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0006	5556	12	0	2	4	1	5	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0007	5556	8	8	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0008	5554	6	5	1	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/1	t0009	5558	6	0	0	1	0	4	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0010	5557	5	0	1	4	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0011	5552	4	4	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0012	5564	4	3	1	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0013	5557	3	3	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0014	5556	3	1	0	1	0	1	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0015	5556	3	3	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0016	5557	3	0	1	0	0	2	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0017	5557	2	0	0	2	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0018	5556	2	2	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0019	5556	2	0	0	2	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0020	5557	2	0	1	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0021	5557	2	0	0	0	0	2	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0022	5558	1	0	0	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0023	5556	1	0	0	0	0	1	copy fasta	CBFA2T2	chr20	33485096	33655030