JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBFA2T2_chr20_33485096_33655030	0/0	t0024	5557	1	0	0	0	0	1	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0025	5556	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0026	5557	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0027	5557	1	0	0	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0028	5557	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0029	5556	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0030	5557	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0031	5557	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0032	5556	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0033	5558	1	0	0	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0034	5557	1	0	0	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0035	5558	1	0	1	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0036	5556	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0037	5556	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0038	5556	1	0	0	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0039	5557	1	0	1	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0040	5557	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0041	5558	1	0	1	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0042	5558	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0043	5557	1	0	0	0	0	1	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0044	5556	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	t0045	5558	1	0	0	0	0	1	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T3_chr16_88869858_88982207	1/1	t0001	2519	233	39	58	93	9	32	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0002	2521	5	5	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0003	2519	3	3	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0004	2518	3	0	0	3	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0005	2521	3	2	1	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0006	2519	2	0	2	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0007	2519	2	2	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0008	2519	2	0	0	2	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0009	2519	2	0	2	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0010	2519	2	0	2	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0011	2519	2	2	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0012	2521	2	2	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0013	2519	1	0	0	0	0	1	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0014	2519	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0015	2519	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0016	2519	1	0	0	0	1	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0017	2519	1	0	1	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0018	2519	1	0	0	0	0	1	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0019	2519	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0020	2519	1	0	0	0	0	1	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0021	2519	1	0	0	0	0	1	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0022	2519	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0023	2519	1	0	0	0	1	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0024	2519	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0025	2519	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0026	2519	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0027	2519	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0028	2519	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207