JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBFA2T3_chr16_88869858_88982207	0/0	t0029	2519	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0030	2521	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0031	2521	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0032	2519	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0033	2521	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0034	2519	1	0	0	0	1	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	t0035	2519	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFB_chr16_67024149_67106058	1/1	t0001	2540	132	30	31	49	5	15	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0002	2540	23	23	0	0	0	0	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0003	2540	14	7	0	6	0	1	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0004	2534	13	13	0	0	0	0	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0005	2533	10	4	1	0	1	4	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0006	2540	6	5	1	0	0	0	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0007	2540	3	1	2	0	0	0	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0008	2540	3	3	0	0	0	0	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0009	2534	3	3	0	0	0	0	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0010	2540	1	0	1	0	0	0	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0011	2540	1	0	0	1	0	0	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0012	2540	1	0	0	0	0	1	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0013	2540	1	1	0	0	0	0	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	t0014	2540	1	0	0	0	0	1	copy fasta	CBFB	chr16	67024149	67106058
CBLB_chr3_105650461_105874012	0/0	t0001	3800	61	3	12	42	2	2	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/1	t0002	3800	50	5	12	22	1	9	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0003	3800	42	14	7	19	1	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0004	3801	41	13	9	15	4	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0005	3800	36	0	4	30	0	2	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0006	3801	28	0	4	13	1	10	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0007	3800	17	6	6	4	0	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0008	3800	14	0	0	13	1	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0009	3801	14	9	2	0	2	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0010	3800	7	0	4	0	0	3	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0011	3796	5	0	0	5	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0012	3800	5	0	0	5	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0013	3800	5	5	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0014	3800	4	4	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0015	3800	4	0	0	4	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0016	3799	4	0	0	4	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0017	3800	3	3	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0018	3800	3	0	0	3	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0019	3799	3	0	0	0	2	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0020	3800	3	2	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0021	3800	2	2	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0022	3801	2	1	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0023	3800	2	2	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	1/0	t0024	3801	2	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0025	3801	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0026	3800	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0027	3801	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0028	3800	1	0	0	1	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0029	3800	1	0	0	1	0	0	copy fasta	CBLB	chr3	105650461	105874012