JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBLB_chr3_105650461_105874012	0/0	t0030	3800	1	0	0	0	0	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0031	3800	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0032	3800	1	0	0	1	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0033	3801	1	0	0	0	0	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0034	3800	1	0	0	1	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0035	3801	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0036	3800	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0037	3801	1	0	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0038	3801	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0039	3801	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0040	3801	1	0	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0041	3801	1	0	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0042	3801	1	0	0	1	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0043	3800	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0044	3800	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0045	3800	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0046	3800	1	0	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	t0047	3801	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLC_chr19_44772890_44805652	1/1	t0001	152	343	93	58	152	6	32	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	t0002	152	1	1	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLIF_chr11_59824273_59850499	1/1	t0001	258	339	79	66	150	18	24	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	t0002	258	2	2	0	0	0	0	copy fasta	CBLIF	chr11	59824273	59850499
CBLIF_chr11_59824273_59850499	0/0	t0003	258	1	1	0	0	0	0	copy fasta	CBLIF	chr11	59824273	59850499
CBLL1_chr7_107739142_107766667	1/1	t0001	2512	176	58	39	54	8	15	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0002	2507	121	4	25	73	3	16	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0003	2512	85	1	9	64	5	6	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0004	2512	14	11	0	3	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0005	2511	7	7	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0006	2512	5	5	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0007	2512	5	4	1	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0008	2507	2	0	0	2	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0009	2512	2	2	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0010	2512	2	0	0	2	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0011	2512	1	1	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0012	2512	1	1	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0013	2512	1	0	1	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0014	2512	1	0	0	0	0	1	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0015	2512	1	0	0	0	0	1	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0016	2512	1	1	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0017	2512	1	1	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0018	2507	1	0	0	1	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0019	2512	1	1	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0020	2512	1	0	0	0	0	1	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0021	2512	1	0	1	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0022	2512	1	0	0	1	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL1_chr7_107739142_107766667	0/0	t0023	2512	1	1	0	0	0	0	copy fasta	CBLL1	chr7	107739142	107766667
CBLL2_chrX_22267913_22279461	1/1	t0001	272	345	78	62	164	13	26	copy fasta	CBLL2	chrX	22267913	22279461
CBLL2_chrX_22267913_22279461	0/0	t0002	272	1	1	0	0	0	0	copy fasta	CBLL2	chrX	22267913	22279461
CBLN1_chr16_49272917_49286838	0/1	t0001	1861	162	26	37	79	8	11	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0002	1860	79	7	14	46	0	12	copy fasta	CBLN1	chr16	49272917	49286838