JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBLN1_chr16_49272917_49286838	0/0	t0003	1861	50	19	7	18	3	3	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	1/0	t0004	1861	20	6	5	2	4	2	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0005	1862	11	1	2	7	0	1	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0006	1861	10	4	0	0	0	6	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0007	1861	9	5	0	2	2	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0008	1861	8	2	0	3	0	3	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0009	1861	5	5	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0010	1862	4	0	3	0	0	1	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0011	1861	3	0	1	2	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0012	1860	3	0	0	3	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0013	1861	3	3	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0014	1861	3	3	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0015	1861	2	0	0	0	0	2	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0016	1862	2	0	0	1	0	1	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0017	1862	2	0	0	0	0	2	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0018	1860	1	0	0	1	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0019	1860	1	0	0	1	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0020	1861	1	0	1	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0021	1861	1	1	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0022	1861	1	1	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0023	1860	1	0	0	1	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0024	1861	1	0	0	1	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0025	1861	1	0	0	1	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0026	1862	1	0	0	1	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0027	1861	1	1	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0028	1861	1	0	0	0	0	1	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0029	1860	1	0	0	0	1	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0030	1860	1	0	0	1	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0031	1861	1	0	0	1	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0032	1861	1	1	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0033	1862	1	1	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0034	1861	1	1	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0035	1861	1	1	0	0	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0036	1862	1	0	0	1	0	0	copy fasta	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	t0037	1860	1	0	0	0	0	1	copy fasta	CBLN1	chr16	49272917	49286838
CBLN2_chr18_72531681_72549342	0/0	t0001	2074	149	6	41	77	7	18	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0002	2073	87	0	0	85	1	1	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	1/0	t0003	2073	44	20	1	17	0	5	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0004	2074	29	5	20	0	2	2	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0005	2073	27	24	3	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0006	2074	16	0	0	13	0	3	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0007	2075	9	8	1	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0008	2073	7	0	0	6	0	1	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0009	2073	6	2	0	3	0	1	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0010	2074	5	5	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0011	2074	5	5	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0012	2072	4	4	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0013	2072	2	2	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0014	2072	2	1	0	1	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0015	2073	2	2	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342