JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBLN2_chr18_72531681_72549342	0/0	t0016	2074	2	1	0	1	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0017	2074	2	0	0	2	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0018	2072	1	1	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0019	2073	1	0	0	0	0	1	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0020	2073	1	0	0	1	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0021	2073	1	1	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0022	2074	1	0	1	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0023	2074	1	1	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0024	2073	1	0	0	1	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0025	2073	1	1	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0026	2073	1	0	0	1	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0027	2074	1	0	1	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0028	2074	1	1	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0029	2074	1	0	1	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0030	2074	1	1	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0031	2074	1	0	0	0	0	1	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0032	2074	1	0	1	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0033	2075	1	0	0	0	0	1	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	t0034	2075	1	1	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/1	t0035	2074	1	0	0	0	0	0	copy fasta	CBLN2	chr18	72531681	72549342
CBLN3_chr14_24421545_24434668	0/1	t0001	1859	255	10	52	149	13	30	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0002	1859	60	19	4	33	1	3	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0003	1859	29	3	8	12	3	3	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	1/0	t0004	1859	29	13	1	4	1	9	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0005	1859	22	10	8	2	0	2	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0006	1859	8	8	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0007	1859	6	0	0	6	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0008	1859	6	6	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0009	1859	6	6	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0010	1859	3	0	0	3	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0011	1859	2	2	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0012	1859	2	0	0	2	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0013	1859	2	0	0	2	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0014	1859	2	2	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0015	1859	2	2	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0016	1859	1	1	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0017	1859	1	0	0	0	0	1	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0018	1859	1	1	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0019	1859	1	1	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0020	1859	1	0	0	1	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0021	1859	1	1	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0022	1859	1	0	0	1	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0023	1859	1	0	0	1	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0024	1859	1	0	1	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0025	1859	1	1	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0026	1859	1	0	1	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0027	1859	1	1	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0028	1859	1	0	0	1	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0029	1859	1	0	0	1	0	0	copy fasta	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	t0030	1859	1	1	0	0	0	0	copy fasta	CBLN3	chr14	24421545	24434668