JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBR1_chr21_36065024_36078164	1/1	t0001	375	335	93	67	124	16	33	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	t0002	375	77	1	9	56	0	11	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	t0003	375	9	0	0	9	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	t0004	375	4	0	0	4	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	t0005	375	2	0	0	2	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	t0006	375	2	0	0	0	0	2	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	t0007	375	1	0	0	1	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR3_chr21_36130079_36151562	1/1	t0001	165	419	94	75	192	15	41	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	t0002	165	3	0	1	0	1	1	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	t0003	165	1	1	0	0	0	0	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	t0004	165	1	1	0	0	0	0	copy fasta	CBR3	chr21	36130079	36151562
CBR4_chr4_168982590_169015255	0/0	t0001	2726	130	10	33	62	9	16	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0002	2726	39	13	4	17	2	3	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0003	2727	30	15	7	0	3	5	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/1	t0004	2727	17	3	5	6	1	1	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0005	2726	16	15	0	1	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	1/0	t0006	2727	11	6	2	0	1	1	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0007	2727	8	8	0	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0008	2728	5	0	2	1	0	2	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0009	2727	4	3	0	0	0	1	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0010	2726	3	2	1	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0011	2728	3	0	3	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0012	2727	2	2	0	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0013	2726	1	1	0	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0014	2726	1	0	1	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0015	2726	1	1	0	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0016	2726	1	0	1	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0017	2726	1	0	0	1	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0018	2727	1	1	0	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0019	2726	1	0	0	1	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0020	2726	1	0	0	0	0	1	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0021	2726	1	0	0	0	0	1	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0022	2726	1	0	0	0	0	1	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0023	2726	1	0	0	1	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0024	2727	1	1	0	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0025	2727	1	1	0	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0026	2727	1	1	0	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0027	2727	1	1	0	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	0/0	t0028	2727	1	0	1	0	0	0	copy fasta	CBR4	chr4	168982590	169015255
CBS_chr21_43048191_43080835	0/0	t0001	840	106	6	23	55	5	17	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0002	840	89	7	22	47	1	12	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0003	840	45	14	3	24	0	4	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0004	835	30	20	7	0	2	1	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0005	840	9	9	0	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0006	840	6	5	1	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0007	840	5	5	0	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0008	835	2	2	0	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0009	840	2	2	0	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0010	840	2	2	0	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	t0011	840	1	0	0	0	0	1	copy fasta	CBS	chr21	43048191	43080835