JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBS_chr21_43048191_43080835	0/0	t0012	840	1	0	0	0	0	1	copy fasta	CBS	chr21	43048191	43080835
CBX1_chr17_48065059_48106478	0/1	t0001	1625	168	25	24	96	7	15	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0002	1625	96	40	12	32	5	7	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0003	1625	90	17	19	45	2	7	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0004	1625	21	0	8	1	4	8	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	1/0	t0005	1625	8	5	2	0	0	0	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0006	1625	4	0	0	4	0	0	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0007	1625	3	0	1	0	0	2	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0008	1625	1	1	0	0	0	0	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0009	1625	1	0	0	0	0	1	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0010	1625	1	1	0	0	0	0	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0011	1625	1	1	0	0	0	0	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0012	1625	1	0	1	0	0	0	copy fasta	CBX1	chr17	48065059	48106478
CBX1_chr17_48065059_48106478	0/0	t0013	1625	1	0	1	0	0	0	copy fasta	CBX1	chr17	48065059	48106478
CBX2_chr17_79773148_79792983	0/1	t0001	3030	182	19	38	89	4	31	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0002	3030	141	24	25	74	4	14	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0003	3030	23	21	2	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0004	3030	11	1	8	0	1	1	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0005	3030	10	0	4	0	6	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0006	3030	9	0	1	8	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0007	3030	9	0	0	9	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0008	3030	8	6	1	0	1	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0009	3030	6	6	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	1/0	t0010	3030	5	0	0	4	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0011	3030	5	5	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0012	3030	4	0	0	4	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0013	3030	4	0	2	0	2	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0014	3030	3	3	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0015	3031	3	0	0	3	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0016	3030	3	0	0	3	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0017	3030	3	3	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0018	3030	3	3	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0019	3030	2	0	0	2	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0020	3030	2	2	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0021	3030	2	1	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0022	3030	2	1	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0023	3030	2	0	0	0	0	2	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0024	3030	2	0	0	2	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0025	3032	2	0	0	2	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0026	3030	2	2	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0027	3030	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0028	3030	1	0	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0029	3030	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0030	3030	1	0	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0031	3032	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0032	3031	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0033	2982	1	0	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0034	3030	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0035	3030	1	0	0	0	0	1	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0036	3030	1	1	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983