JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBX2_chr17_79773148_79792983	0/0	t0037	3030	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0038	3030	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0039	3030	1	1	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0040	3030	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0041	3030	1	0	0	0	0	1	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0042	3030	1	1	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0043	3030	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	t0044	3030	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX3_chr7_26196745_26218607	1/1	t0001	1510	123	21	33	47	4	16	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0002	1506	52	6	8	27	2	9	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0003	1512	39	4	2	30	0	3	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0004	1508	38	14	6	17	0	1	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0005	1504	27	0	0	26	0	1	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0006	1508	26	6	0	19	0	1	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0007	1502	20	18	2	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0008	1508	14	7	1	5	1	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0009	1510	13	1	3	5	1	3	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0010	1514	10	2	0	8	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0011	1512	9	0	0	9	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0012	1494	6	2	1	0	2	1	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0013	1510	5	0	2	3	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0014	1508	3	0	3	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0015	1518	3	3	0	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0016	1506	2	0	0	0	0	2	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0017	1506	2	0	2	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0018	1508	2	2	0	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0019	1510	2	2	0	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0020	1502	2	0	2	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0021	1508	1	1	0	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0022	1504	1	1	0	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0023	1506	1	1	0	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0024	1512	1	1	0	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0025	1512	1	0	0	1	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0026	1514	1	1	0	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0027	1510	1	0	0	1	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0028	1506	1	0	0	1	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0029	1508	1	0	0	0	0	1	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0030	1508	1	1	0	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0031	1510	1	0	1	0	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	t0032	1500	1	0	0	1	0	0	copy fasta	CBX3	chr7	26196745	26218607
CBX4_chr17_79828156_79844440	0/0	t0001	992	251	57	36	118	8	32	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	1/1	t0002	993	111	17	27	51	4	10	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0003	991	31	9	8	9	1	4	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0004	994	8	6	0	1	1	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0005	993	6	0	0	4	0	2	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0006	994	3	0	2	1	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0007	994	2	2	0	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0008	995	2	0	1	0	0	1	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0009	992	1	0	0	1	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0010	992	1	0	1	0	0	0	copy fasta	CBX4	chr17	79828156	79844440