JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBX4_chr17_79828156_79844440	0/0	t0011	994	1	0	0	1	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0012	992	1	0	1	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0013	993	1	0	0	0	0	1	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	t0014	992	1	1	0	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX5_chr12_54225942_54285122	0/1	t0001	10971	80	6	15	46	5	7	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0002	10971	57	4	14	35	0	4	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0003	10969	31	2	9	9	0	11	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0004	10972	17	3	5	8	0	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0005	10972	13	0	0	10	0	3	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	1/0	t0006	10971	13	1	5	0	3	3	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0007	10968	11	11	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0008	10955	9	0	1	8	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0009	10970	9	1	2	5	1	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0010	10970	8	6	2	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0011	10971	7	0	0	7	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0012	10970	5	3	0	0	1	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0013	10968	5	4	1	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0014	10970	5	0	3	2	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0015	10971	5	5	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0016	10968	4	4	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0017	10962	3	3	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0018	10969	3	3	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0019	10972	3	0	0	3	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0020	10972	3	2	0	0	1	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0021	10971	2	2	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0022	10968	2	2	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0023	10968	2	2	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0024	10969	2	2	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0025	10972	2	2	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0026	10971	2	0	0	2	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0027	10968	2	2	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0028	10966	2	2	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0029	10968	2	2	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0030	10971	2	0	1	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0031	10967	2	2	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0032	10971	2	0	0	2	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0033	10971	2	0	2	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0034	10971	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0035	10967	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0036	10967	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0037	10967	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0038	10970	1	0	0	0	1	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0039	10970	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0040	10970	1	0	0	0	1	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0041	10971	1	0	0	0	0	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0042	10973	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0043	10972	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0044	10972	1	0	1	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0045	10972	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0046	10966	1	0	1	0	0	0	copy fasta	CBX5	chr12	54225942	54285122