JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBX5_chr12_54225942_54285122	0/0	t0047	10967	1	0	1	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0048	10966	1	0	0	0	1	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0049	10972	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0050	10971	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0051	11314	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0052	10969	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0053	10968	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0054	10971	1	0	0	0	0	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0055	10971	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0056	10967	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0057	10972	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0058	10969	1	0	0	0	1	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0059	10970	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0060	10968	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0061	10969	1	0	0	0	0	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0062	10971	1	0	0	0	0	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0063	10971	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0064	10972	1	0	0	0	0	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0065	10971	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0066	10971	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0067	10971	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0068	10937	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0069	10971	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0070	10970	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0071	10971	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0072	10971	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0073	10971	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0074	10972	1	0	1	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0075	10972	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0076	10972	1	0	0	0	0	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0077	10972	1	0	1	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0078	10971	1	0	0	0	1	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0079	10971	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0080	10971	1	0	0	0	0	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0081	10972	1	0	0	0	0	1	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0082	10972	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0083	10971	1	0	1	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	t0084	10971	1	0	0	1	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX6_chr22_38856422_38877216	0/0	t0001	4814	46	2	19	17	3	5	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/1	t0002	4815	35	0	3	24	4	3	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0003	4814	30	0	6	18	1	5	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0004	4814	27	1	5	13	3	5	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0005	4815	23	1	7	10	0	5	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0006	4816	19	0	2	16	0	1	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0007	4815	10	2	2	4	0	2	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0008	4814	10	10	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0009	4809	9	2	0	6	0	1	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0010	4815	8	7	1	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0011	4815	8	0	0	4	1	3	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0012	4813	7	6	1	0	0	0	copy fasta	CBX6	chr22	38856422	38877216