JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBX6_chr22_38856422_38877216	0/0	t0113	4814	1	0	0	1	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	1/0	t0114	4814	1	0	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0115	4814	1	0	0	1	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0116	4816	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0117	4810	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0118	4814	1	0	1	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0119	4815	1	0	0	1	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0120	4815	1	0	0	0	1	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0121	4816	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0122	4815	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0123	4816	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0124	4814	1	0	0	1	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	t0125	4810	1	0	0	1	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX7_chr22_39125772_39157680	1/0	t0001	3356	100	5	20	56	4	14	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0002	3356	95	3	19	58	3	12	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0003	3356	84	32	8	28	4	12	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0004	3356	18	11	2	3	1	1	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0005	3356	9	7	2	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/1	t0006	3356	8	0	0	5	1	1	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0007	3352	6	6	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0008	3356	6	0	4	0	0	2	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0009	3356	6	6	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0010	3356	5	5	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0011	3356	4	0	0	4	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0012	3356	4	0	4	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0013	3356	4	0	0	0	0	4	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0014	3350	3	3	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0015	3356	2	0	1	0	1	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0016	3356	2	2	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0017	3356	2	1	1	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0018	3356	2	0	2	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0019	3356	2	0	2	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0020	3350	1	0	0	1	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0021	3350	1	1	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0022	3350	1	1	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0023	3356	1	0	1	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0024	3356	1	0	0	1	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0025	3356	1	1	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0026	3356	1	1	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0027	3356	1	1	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0028	3356	1	0	0	0	0	1	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0029	3352	1	1	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0030	3356	1	1	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0031	3352	1	1	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0032	3356	1	0	1	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0033	3356	1	0	1	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0034	3356	1	1	0	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0035	3356	1	0	0	1	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0036	3356	1	0	0	0	0	1	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	t0037	3356	1	0	0	1	0	0	copy fasta	CBX7	chr22	39125772	39157680