Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAM17_chr2_9483486_9560830	0/0	t0069	1917	1	1	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0070	1917	1	1	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0071	1918	1	0	1	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0072	1916	1	0	1	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0073	1916	1	0	1	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0074	1917	1	0	0	0	0	1	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0075	1916	1	0	0	1	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0076	1918	1	0	1	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0077	1918	1	0	0	1	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	t0078	1919	1	0	0	1	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM18_chr8_39579568_39735065	0/1	t0001	181	342	87	74	134	8	38	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	t0002	181	3	3	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	t0003	181	2	2	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM19_chr5_157472304_157580775	0/1	t0001	3725	68	7	12	41	2	5	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	1/0	t0002	3725	55	12	25	12	1	4	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0003	3724	22	2	4	4	4	8	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0004	3723	19	13	1	0	0	5	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0005	3727	18	0	0	16	0	2	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0006	3726	17	0	3	13	0	1	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0007	3724	14	5	6	0	2	1	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0008	3724	14	13	0	1	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0009	3726	9	1	1	5	0	2	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0010	3726	7	6	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0011	3724	5	2	0	1	1	1	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0012	3713	5	1	2	0	2	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0013	3713	4	4	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0014	3725	4	4	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0015	3724	3	0	2	0	0	1	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0016	3725	3	0	3	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0017	3723	3	0	3	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0018	3727	3	3	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0019	3725	3	3	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0020	3725	3	0	0	3	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0021	3724	2	0	0	0	2	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0022	3723	2	0	2	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0023	3724	2	1	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0024	3725	2	1	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0025	3724	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0026	3725	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0027	3724	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0028	3724	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0029	3725	1	0	0	1	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0030	3725	1	0	0	1	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0031	3726	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0032	3726	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0033	3727	1	0	0	1	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0034	3724	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0035	3713	1	0	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0036	3723	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0037	3724	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775