JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBX8_chr17_79787132_79802077	1/1	t0001	2583	201	22	40	112	5	20	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0002	2583	72	46	6	10	3	7	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0003	2583	36	1	11	12	1	11	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0004	2583	22	12	8	0	0	2	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0005	2584	10	0	0	10	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0006	2582	10	1	5	0	2	2	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0007	2583	9	6	2	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0008	2583	6	0	0	5	0	1	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0009	2582	5	1	0	4	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0010	2583	4	0	0	4	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0011	2582	3	3	0	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0012	2582	3	1	0	2	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0013	2583	3	0	2	0	1	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0014	2583	2	0	2	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0015	2581	2	0	2	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0016	2582	2	1	1	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0017	2583	2	0	0	2	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0018	2583	1	0	0	0	1	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0019	2582	1	0	0	0	1	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0020	2582	1	1	0	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0021	2583	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0022	2583	1	0	0	0	0	1	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0023	2583	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0024	2583	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0025	2583	1	1	0	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0026	2583	1	0	0	0	0	1	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0027	2583	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0028	2583	1	0	0	0	0	1	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0029	2583	1	1	0	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0030	2583	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0031	2583	1	1	0	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0032	2583	1	1	0	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0033	2583	1	0	0	0	0	1	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0034	2583	1	0	1	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0035	2584	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0036	2582	1	1	0	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	t0037	2583	1	0	0	0	0	1	copy fasta	CBX8	chr17	79787132	79802077
CBY1_chr22_38651638_38678850	1/0	t0001	766	208	43	49	75	15	25	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/1	t0002	766	117	30	11	62	3	10	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	t0003	766	54	19	1	33	0	1	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	t0004	766	1	0	0	0	0	1	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	t0005	766	1	0	1	0	0	0	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	t0006	766	1	0	0	1	0	0	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	t0007	766	1	0	0	1	0	0	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	t0008	766	1	0	0	0	0	1	copy fasta	CBY1	chr22	38651638	38678850
CBY2_chr13_45697320_45719559	1/1	t0001	259	396	75	62	200	18	39	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	t0002	259	31	15	9	0	0	7	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	t0003	259	10	6	4	0	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	t0004	259	2	0	0	0	0	2	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	t0005	259	1	0	1	0	0	0	copy fasta	CBY2	chr13	45697320	45719559