JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CBY3_chr5_179673560_179686034	1/1	t0001	140	412	94	76	180	18	42	copy fasta	CBY3	chr5	179673560	179686034
CC2D1A_chr19_13901201_13935879	1/1	t0001	726	315	81	56	132	12	32	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	t0002	726	39	4	6	18	2	9	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	t0003	726	5	5	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	t0004	726	3	3	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	t0005	726	2	1	0	0	0	1	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	t0006	726	2	2	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	t0007	726	1	0	0	1	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	t0008	726	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	t0009	726	1	0	0	1	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	t0010	726	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1B_chr1_52345597_52371205	1/1	t0001	2779	125	10	32	68	5	8	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0002	2779	42	10	16	2	2	12	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0003	2777	25	0	4	21	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0004	2779	19	19	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0005	2778	17	9	4	3	0	1	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0006	2780	13	12	0	0	1	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0007	2779	12	4	0	2	1	5	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0008	2780	11	0	2	7	0	2	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0009	2778	8	0	0	5	0	3	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0010	2778	5	0	1	2	1	1	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0011	2781	5	5	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0012	2779	4	4	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0013	2780	3	3	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0014	2781	3	3	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0015	2779	2	2	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0016	2778	2	2	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0017	2779	2	0	0	2	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0018	2779	2	1	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0019	2780	2	2	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0020	2780	2	2	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0021	2778	2	1	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0022	2778	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0023	2779	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0024	2781	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0025	2779	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0026	2779	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0027	2779	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0028	2779	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0029	2778	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0030	2778	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0031	2779	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0032	2780	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0033	2779	1	0	0	0	0	1	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0034	2781	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0035	2779	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0036	2779	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	t0037	2778	1	0	0	0	0	1	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D2A_chr4_15464882_15606552	0/0	t0001	322	191	44	34	74	8	31	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	1/1	t0002	322	151	45	23	64	6	11	copy fasta	CC2D2A	chr4	15464882	15606552