JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CC2D2A_chr4_15464882_15606552	0/0	t0003	322	2	1	1	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2B_chr10_95902975_96038745	1/1	t0001	1844	250	72	60	79	13	24	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	t0002	1844	50	10	1	33	0	6	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	t0003	1844	6	1	2	0	1	2	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	t0004	1844	2	0	2	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	t0005	1844	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	t0006	1844	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	t0007	1844	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	t0008	1844	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CCAR1_chr10_68716239_68797377	1/1	t0001	1206	300	60	48	142	12	36	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0002	1206	27	12	5	9	0	1	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0003	1206	8	0	0	8	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0004	1204	5	5	0	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0005	1206	3	0	2	1	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0006	1206	2	0	2	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0007	1206	2	2	0	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0008	1206	2	2	0	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0009	1206	2	0	1	0	0	1	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0010	1206	1	1	0	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0011	1206	1	0	0	1	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0012	1206	1	0	0	0	1	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0013	1206	1	0	1	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0014	1204	1	1	0	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0015	1206	1	0	1	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0016	1206	1	0	0	0	1	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0017	1206	1	0	0	1	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	t0018	1206	1	1	0	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR2_chr8_22599757_22625471	0/0	t0001	914	115	0	32	65	4	14	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/1	t0002	917	74	6	14	30	7	16	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	1/0	t0003	914	62	21	17	16	4	3	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0004	915	21	18	2	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0005	912	18	14	4	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0006	911	17	11	3	1	1	1	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0007	916	11	0	0	11	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0008	914	9	0	0	9	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0009	918	7	1	0	3	0	3	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0010	915	6	0	0	6	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0011	911	5	5	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0012	917	5	0	1	0	1	3	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0013	916	3	2	1	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0014	914	2	0	2	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0015	914	2	2	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0016	916	2	1	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0017	917	2	0	0	2	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0018	914	2	0	0	2	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0019	917	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0020	917	1	0	0	0	0	1	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0021	914	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0022	911	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0023	914	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471