JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCAR2_chr8_22599757_22625471	0/0	t0024	915	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0025	916	1	0	0	0	1	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0026	918	1	0	0	0	0	1	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0027	914	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0028	914	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0029	914	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0030	914	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	t0031	914	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCBE1_chr18_59425939_59702423	0/0	t0001	5047	70	12	14	30	1	13	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	1/0	t0002	5051	26	8	6	8	2	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0003	5046	12	10	0	0	0	2	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0004	5057	11	5	2	0	3	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0005	5048	9	4	2	2	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0006	5057	8	7	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0007	5056	8	0	2	6	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0008	5057	8	0	0	3	0	5	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0009	5058	7	5	1	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0010	5056	5	5	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0011	5059	4	2	1	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0012	5057	3	0	1	0	2	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0013	5056	3	1	2	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0014	5048	3	0	1	0	0	2	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/1	t0015	5047	3	0	2	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0016	5052	2	1	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0017	5047	2	2	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0018	5051	2	2	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0019	5051	2	0	2	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0020	5047	2	0	0	2	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0021	5047	2	0	1	0	1	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0022	5046	2	2	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0023	5045	2	2	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0024	5057	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0025	5051	1	0	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0026	5055	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0027	5060	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0028	5058	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0029	5059	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0030	5058	1	0	0	1	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0031	5057	1	0	0	1	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0032	5057	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0033	5058	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0034	5057	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0035	5057	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0036	5057	1	0	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0037	5056	1	0	0	1	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0038	5056	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0039	5055	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0040	5057	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0041	5064	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0042	5064	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423