JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCBE1_chr18_59425939_59702423	0/0	t0043	5047	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0044	5047	1	0	0	0	1	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0045	5051	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0046	5050	1	0	0	1	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0047	5051	1	0	0	1	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0048	5047	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0049	5047	1	0	0	0	1	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0050	5047	1	0	0	1	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0051	5047	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0052	5047	1	0	0	0	1	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0053	5047	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0054	5046	1	0	0	1	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0055	5048	1	0	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0056	5047	1	0	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0057	5047	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0058	5045	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0059	5046	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0060	5051	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0061	5058	1	0	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0062	5057	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0063	5057	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0064	5057	1	0	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0065	5054	1	0	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0066	5058	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0067	5058	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0068	5051	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	t0069	5047	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCDC102A_chr16_57507181_57541571	1/1	t0001	780	161	5	30	102	6	16	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0002	780	53	34	7	5	3	4	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0003	780	29	10	1	11	1	6	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0004	782	27	0	10	13	0	4	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0005	784	24	0	1	19	1	3	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0006	786	22	2	3	16	0	1	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0007	780	15	13	1	0	0	1	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0008	782	13	13	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0009	782	12	3	2	2	1	4	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0010	780	6	5	1	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0011	786	5	3	1	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0012	788	5	5	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0013	782	4	0	0	3	0	1	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0014	784	4	0	2	1	1	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0015	780	4	0	0	0	0	4	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0016	784	3	0	0	3	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0017	780	3	0	0	0	0	3	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0018	782	3	0	2	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0019	781	2	0	1	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0020	780	2	0	0	2	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0021	780	2	2	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0022	770	2	2	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0023	780	2	0	2	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571