JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC102A_chr16_57507181_57541571	0/0	t0024	781	1	0	1	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0025	783	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0026	789	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0027	783	1	0	1	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0028	780	1	0	1	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0029	780	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0030	782	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0031	780	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0032	780	1	0	0	0	1	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0033	780	1	0	1	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0034	782	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0035	782	1	0	0	0	0	1	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	t0036	780	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102B_chr18_68793080_69060189	1/1	t0001	1170	183	55	33	65	6	22	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	t0002	1167	9	8	1	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	t0003	1170	7	1	3	0	0	3	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	t0004	1169	7	6	1	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	t0005	1170	3	0	0	3	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	t0006	1170	3	3	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	t0007	1434	1	0	0	1	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	t0008	1170	1	0	0	1	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	t0009	1170	1	0	0	0	0	1	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	t0010	1170	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC103_chr17_44894729_44910390	1/0	t0001	2714	226	64	33	102	8	18	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0002	2717	68	10	9	42	1	6	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0003	2714	41	7	9	15	0	10	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0004	2714	36	5	5	22	2	2	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/1	t0005	2717	22	7	11	0	1	2	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0006	2714	7	0	2	0	3	2	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0007	2714	3	0	1	0	2	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0008	2717	3	1	1	0	1	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0009	2717	2	0	0	0	0	2	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0010	2714	2	0	2	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0011	2714	2	0	0	2	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0012	2714	2	0	0	0	0	2	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0013	2714	1	0	1	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0014	2714	1	0	1	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0015	2714	1	0	0	0	0	1	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0016	2714	1	0	0	1	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0017	2712	1	1	0	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0018	2717	1	1	0	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0019	2717	1	0	1	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0020	2717	1	1	0	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0021	2717	1	0	0	1	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0022	2714	1	0	0	1	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0023	2714	1	0	0	0	0	1	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	t0024	2714	1	1	0	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC105_chr19_15005726_15028276	1/1	t0001	258	438	90	80	200	18	48	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	t0002	258	2	2	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC106_chr19_55643212_55658161	0/0	t0001	1252	170	54	28	70	4	14	copy fasta	CCDC106	chr19	55643212	55658161