JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC106_chr19_55643212_55658161	0/1	t0002	1253	167	22	44	69	11	20	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0003	1253	25	3	6	8	0	8	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0004	1252	9	9	0	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0005	1253	5	2	1	2	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0006	1254	5	0	0	3	0	2	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	1/0	t0007	1251	3	0	0	1	0	1	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0008	1254	3	0	0	2	0	1	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0009	1251	2	1	0	0	0	1	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0010	1254	2	0	0	1	0	1	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0011	1253	2	2	0	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0012	1253	2	0	1	0	1	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0013	1255	2	1	1	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0014	1252	1	0	0	1	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0015	1252	1	0	0	1	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0016	1253	1	0	0	0	0	1	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0017	1252	1	0	1	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0018	1269	1	1	0	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0019	1252	1	1	0	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0020	1252	1	0	1	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0021	1253	1	1	0	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0022	1252	1	0	0	1	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0023	1252	1	1	0	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0024	1253	1	0	0	0	0	1	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0025	1252	1	1	0	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0026	1253	1	0	1	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0027	1254	1	1	0	0	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	t0028	1254	1	0	0	1	0	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC107_chr9_35653292_35666511	1/1	t0001	413	249	73	47	84	11	32	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	t0002	413	81	1	9	66	0	5	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	t0003	413	67	3	16	35	5	8	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	t0004	413	22	14	2	4	0	2	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	t0005	413	5	0	0	5	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	t0006	413	1	1	0	0	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	t0007	413	1	0	0	0	0	1	copy fasta	CCDC107	chr9	35653292	35666511
CCDC110_chr4_185440182_185476733	0/1	t0001	371	319	36	72	167	14	29	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	1/0	t0002	371	56	40	7	1	2	5	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	t0003	371	48	24	1	17	1	5	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	t0004	371	3	0	0	0	0	3	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	t0005	371	1	0	0	0	1	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	t0006	353	1	0	0	1	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC112_chr5_115262190_115301654	1/1	t0001	798	371	88	75	153	16	37	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	t0002	798	13	9	2	0	0	2	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	t0003	798	2	1	1	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	t0004	798	1	0	0	0	0	1	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	t0005	798	1	0	0	1	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC113_chr16_58244936_58288836	0/0	t0001	4140	126	49	13	39	7	18	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/1	t0002	4140	98	3	18	59	5	12	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0003	4144	28	0	10	12	2	4	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0004	4140	25	5	2	17	1	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	1/0	t0005	4139	21	5	13	0	0	2	copy fasta	CCDC113	chr16	58244936	58288836