JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC113_chr16_58244936_58288836	0/0	t0006	4140	13	0	4	8	1	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0007	4139	11	0	0	8	0	3	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0008	4140	10	2	6	0	0	2	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0009	4140	7	0	0	7	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0010	4140	6	0	1	5	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0011	4140	4	0	0	4	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0012	4147	3	3	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0013	4139	2	0	0	1	1	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0014	4139	2	0	0	2	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0015	4146	2	0	1	0	0	1	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0016	4140	1	1	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0017	4141	1	1	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0018	4140	1	0	0	0	0	1	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0019	4144	1	0	1	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0020	4145	1	1	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0021	4140	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0022	4141	1	1	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0023	4140	1	0	1	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0024	4139	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0025	4140	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0026	4140	1	1	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0027	4140	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0028	4140	1	1	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0029	4140	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0030	4140	1	0	0	0	0	1	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0031	4140	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0032	4141	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0033	4140	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0034	4140	1	0	0	0	1	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	t0035	4147	1	1	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC115_chr2_130332933_130347164	1/1	t0001	1227	367	77	64	168	14	42	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	t0002	1227	8	8	0	0	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	t0003	1227	4	4	0	0	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	t0004	1227	1	0	0	1	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	t0005	1227	1	0	0	1	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	t0006	1227	1	1	0	0	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	t0007	1227	1	1	0	0	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	t0008	1227	1	1	0	0	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC116_chr22_21627760_21642329	1/1	t0001	390	386	98	68	157	16	45	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	t0002	390	4	0	0	3	0	1	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	t0003	390	2	0	2	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	t0004	390	1	0	0	1	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	t0005	390	1	0	0	1	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC117_chr22_28767695_28794295	1/0	t0001	3125	122	17	38	51	5	10	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/1	t0002	3122	57	3	3	38	3	9	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0003	3126	56	24	1	25	0	6	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0004	3127	54	1	9	43	0	1	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0005	3125	22	6	3	8	0	5	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0006	3126	12	0	3	4	2	3	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0007	3124	12	0	0	12	0	0	copy fasta	CCDC117	chr22	28767695	28794295