JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC117_chr22_28767695_28794295	0/0	t0008	3125	10	10	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0009	3126	7	0	2	5	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0010	3125	5	3	2	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0011	3122	4	0	0	0	0	4	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0012	3125	4	0	0	3	1	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0013	3126	4	0	0	2	0	2	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0014	3127	3	3	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0015	3123	3	0	0	2	0	1	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0016	3123	3	0	0	2	0	1	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0017	3126	2	2	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0018	3126	2	2	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0019	3125	2	2	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0020	3125	2	2	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0021	3127	2	0	0	2	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0022	3126	2	0	0	2	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0023	3125	2	2	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0024	3125	2	0	0	2	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0025	3125	2	1	1	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0026	3127	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0027	3126	1	0	0	0	0	1	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0028	3125	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0029	3126	1	0	0	0	0	1	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0030	3126	1	0	0	0	1	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0031	3126	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0032	3127	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0033	3122	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0034	3126	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0035	3125	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0036	3125	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0037	3126	1	0	0	0	0	1	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0038	3127	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0039	3122	1	0	0	0	0	1	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0040	3124	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0041	3127	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0042	3124	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0043	3125	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0044	3125	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0045	3125	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0046	3126	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	t0047	3126	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC120_chrX_49053999_49074854	0/1	t0001	1493	240	45	46	103	13	32	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	1/0	t0002	1377	33	28	3	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0003	1493	2	0	0	2	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0004	1377	1	1	0	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0005	1493	1	0	0	0	0	1	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0006	1491	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0007	1492	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0008	1493	1	0	1	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0009	1494	1	0	0	0	0	1	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0010	1377	1	1	0	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854