JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC120_chrX_49053999_49074854	0/0	t0011	1377	1	1	0	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0012	1493	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0013	1493	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0014	1491	1	0	1	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	t0015	1494	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC121_chr2_27620638_27634012	0/0	t0001	1507	261	40	40	149	9	23	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	1/1	t0002	1507	89	27	21	19	7	13	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	t0003	1507	11	8	3	0	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	t0004	1506	6	0	0	6	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	t0005	1502	6	5	1	0	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	t0006	1507	4	0	0	4	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	t0007	1507	3	3	0	0	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	t0008	1507	2	0	0	0	0	2	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	t0009	1507	1	1	0	0	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	t0010	1507	1	0	1	0	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC122_chr13_43831352_43884740	0/1	t0001	1239	135	30	19	65	3	17	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0002	1239	51	2	13	23	3	10	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	1/0	t0003	1238	51	8	9	32	0	1	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0004	1239	27	0	3	23	1	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0005	1240	25	5	3	14	2	1	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0006	1239	22	0	0	16	0	6	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0007	1239	19	0	5	12	0	2	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0008	1240	18	6	1	7	1	3	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0009	1238	18	10	4	0	1	3	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0010	1238	9	7	2	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0011	1239	9	0	0	9	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0012	1240	7	0	3	3	0	1	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0013	1238	7	6	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0014	1240	5	4	1	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0015	1240	4	0	1	3	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0016	1240	4	4	0	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0017	1239	4	1	1	2	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0018	1239	3	3	0	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0019	1238	2	0	0	2	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0020	1238	2	0	0	1	1	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0021	1240	2	1	0	0	0	1	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0022	1238	2	0	0	2	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0023	1240	2	0	0	2	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0024	1240	2	0	0	2	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0025	1239	1	0	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0026	1239	1	0	0	0	0	1	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0027	1240	1	1	0	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0028	1570	1	0	1	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0029	1239	1	0	1	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0030	1239	1	0	1	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0031	1238	1	1	0	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0032	1239	1	0	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0033	1238	1	0	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0034	1239	1	0	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	t0035	1238	1	1	0	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740