JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC122_chr13_43831352_43884740	0/0	t0036	1239	1	0	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC124_chr19_17928015_17948985	1/1	t0001	316	289	68	61	114	12	32	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	t0002	316	129	30	23	60	2	14	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	t0003	316	2	2	0	0	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC125_chr5_69275175_69337801	0/0	t0001	2748	97	12	22	46	3	14	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0002	2749	88	8	18	47	4	11	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0003	2748	52	15	7	23	0	7	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/1	t0004	2748	29	14	9	2	1	2	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0005	2749	20	18	2	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0006	2749	15	10	2	3	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0007	2748	8	0	0	8	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0008	2749	6	1	0	5	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0009	2749	4	0	4	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0010	2748	3	3	0	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0011	2748	2	2	0	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0012	2748	2	1	1	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0013	2748	2	2	0	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0014	2748	2	0	2	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0015	2748	2	0	0	2	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0016	2748	1	1	0	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0017	2749	1	0	1	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0018	2748	1	0	1	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0019	2749	1	1	0	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0020	2749	1	0	1	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0021	2748	1	0	0	1	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0022	2748	1	0	0	1	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0023	2748	1	0	0	1	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	t0024	2749	1	0	0	1	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC126_chr7_23592382_23649708	0/1	t0001	2048	274	57	55	120	10	31	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	1/0	t0002	2048	60	2	16	33	1	7	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0003	2048	10	10	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0004	2046	6	6	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0005	2047	6	5	1	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0006	2048	4	4	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0007	2048	3	3	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0008	2048	2	2	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0009	2048	2	0	0	0	0	2	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0010	2048	1	0	0	0	0	1	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0011	2048	1	0	0	0	1	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0012	2048	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0013	2048	1	0	0	1	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0014	2048	1	0	1	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0015	2048	1	0	1	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0016	2048	1	0	0	1	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0017	2048	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0018	2048	1	0	0	1	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0019	2048	1	0	0	0	0	1	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0020	2048	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0021	2048	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	t0022	2048	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708