JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC127_chr5_191868_223153	0/1	t0001	8463	93	2	14	55	4	17	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0002	8505	8	0	0	8	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0003	8501	8	0	0	8	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0004	8462	6	0	0	6	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0005	8501	6	0	0	6	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0006	8459	6	0	4	0	1	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0007	8501	5	0	0	4	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0008	8501	5	0	0	5	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0009	8501	4	0	0	4	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0010	8463	3	0	0	2	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0011	8501	3	0	0	3	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0012	8501	3	0	3	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0013	8463	3	0	1	0	0	2	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0014	8383	3	1	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0015	8390	3	3	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0016	8505	2	0	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0017	8505	2	0	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0018	8501	2	0	0	0	1	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0019	8501	2	0	1	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0020	8505	2	0	0	2	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0021	8505	2	0	1	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0022	8501	2	0	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0023	8505	2	0	0	2	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0024	8501	2	0	0	2	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0025	8501	2	0	0	2	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0026	8505	2	0	0	2	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0027	8501	2	0	0	2	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0028	8505	2	0	0	0	0	2	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0029	8501	2	0	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0030	8501	2	0	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0031	8501	2	2	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0032	8463	2	0	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0033	8462	2	0	0	2	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0034	8441	2	0	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0035	8459	2	0	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0036	8501	2	2	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0037	8501	2	2	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0038	8465	2	2	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0039	8465	2	2	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0040	8465	2	1	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0041	8384	2	2	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0042	8383	2	0	0	1	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0043	8383	2	0	0	2	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0044	8387	2	0	2	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0045	8387	2	2	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0046	8384	2	2	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0047	8463	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0048	8457	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0049	8461	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	1/0	t0050	8501	1	0	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153