JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC127_chr5_191868_223153	0/0	t0051	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0052	8463	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0053	8506	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0054	8505	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0055	8501	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0056	8505	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0057	8505	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0058	8505	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0059	8505	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0060	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0061	8505	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0062	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0063	8504	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0064	8505	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0065	8463	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0066	8463	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0067	8463	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0068	8462	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0069	8462	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0070	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0071	8504	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0072	8504	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0073	8504	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0074	8498	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0075	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0076	8505	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0077	8505	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0078	8505	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0079	8505	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0080	8506	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0081	8501	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0082	8501	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0083	8505	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0084	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0085	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0086	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0087	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0088	8501	1	0	0	0	1	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0089	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0090	8501	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0091	8500	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0092	8505	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0093	8501	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0094	8501	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0095	8501	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0096	8501	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0097	8505	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0098	8501	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0099	8505	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0100	8505	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153