JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CCDC127_chr5_191868_223153	0/0	t0151	8464	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0152	8465	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0153	8463	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0154	8463	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0155	8462	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0156	8505	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0157	8463	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0158	8479	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0159	8504	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0160	8501	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0161	8506	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0162	8463	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0163	8466	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0164	8384	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0165	8460	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0166	8459	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0167	8455	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0168	8459	1	0	0	0	1	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0169	8459	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0170	8459	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0171	8456	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0172	8460	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0173	8459	1	0	0	0	1	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0174	8463	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0175	8464	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0176	8501	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0177	8501	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0178	8501	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0179	8462	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0180	8456	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0181	8457	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0182	8457	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0183	8457	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0184	8456	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0185	8456	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0186	8463	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0187	8459	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0188	8465	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0189	8436	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0190	8438	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0191	8436	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0192	8461	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0193	8465	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0194	8465	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0195	8465	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0196	8465	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0197	8466	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0198	8461	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0199	8461	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	t0200	8465	1	1	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153